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An optimized workflow for improved gene expression profiling for formalin-fixed, paraffin-embedded tumor samples
Marlene Thomas, Manuela Poignée-Heger, Martin Weisser, Stephanie Wessner, Anton Belousov Journal of Clinical Bioinformatics 2013, 3:10 (3 May 2013)
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A diagnostic methodology for Alzheimer's disease
Wen-Chin Hsu, Christopher Denq, Su-Shing Chen Journal of Clinical Bioinformatics 2013, 3:9 (25 April 2013)
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Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays
Camilo Valdes, Pearl Seo, Nicholas Tsinoremas, Jennifer Clarke Journal of Clinical Bioinformatics 2013, 3:8 (18 April 2013)
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TUMIR: an experimentally supported database of microRNA deregulation in various cancers
Lei Dong, Min Luo, Fang Wang, Junwu Zhang, Tingting Li, Jia Yu Journal of Clinical Bioinformatics 2013, 3:7 (17 April 2013)
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Annual acknowledgement of manuscript reviewers
Xiangdong Wang Journal of Clinical Bioinformatics 2013, 3:5 (22 March 2013)
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MicroRNAs: an emerging science in cancer epigenetics
Rishabh Kala, Gregory W Peek, Tabitha M Hardy, Trygve O Tollefsbol Journal of Clinical Bioinformatics 2013, 3:6 (16 March 2013)
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Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
Li-Yeh Chuang, Hsueh-Wei Chang, Ming-Cheng Lin, Cheng-Hong Yang Journal of Clinical Bioinformatics 2013, 3:4 (14 February 2013)
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Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period
Perry G Ridge, Christine Miller, Pinar Bayrak-Toydemir, D Hunter Best, Rong Mao, Jeffrey J Swensen, Elaine Lyon, Karl V Voelkerding Journal of Clinical Bioinformatics 2013, 3:3 (23 January 2013)
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A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome
Walter Arancio, Carla Giordano, Giuseppe Pizzolanti Journal of Clinical Bioinformatics 2013, 3:2 (14 January 2013)
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Availability of MudPIT data for classification of biological samples
Dario Silvestre, Italo Zoppis, Francesca Brambilla, Valeria Bellettato, Giancarlo Mauri, Pierluigi Mauri Journal of Clinical Bioinformatics 2013, 3:1 (14 January 2013)
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PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data
Chirayu Pankaj Goswami, Harikrishna Nakshatri Journal of Clinical Bioinformatics 2012, 2:23 (28 December 2012)
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mCOPA: analysis of heterogeneous features in cancer expression data
Chenwei Wang, Alperen Taciroglu, Stefan R Maetschke, Colleen C Nelson, Mark A Ragan, Melissa J Davis Journal of Clinical Bioinformatics 2012, 2:22 (10 December 2012)
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Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
Subhashini Srinivasan, Arun H Patil, Mohit Verma, Jonathan L Bingham, Raghunathan Srivatsan Journal of Clinical Bioinformatics 2012, 2:21 (26 November 2012)
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Using gene expression data to identify certain gastro-intestinal diseases
Philip S Crooke, John T Tossberg, Sara N Horst, John L Tauscher, Melodie A Henderson, Dawn B Beaulieu, David A Schwartz, Nancy J Olsen, Thomas M Aune Journal of Clinical Bioinformatics 2012, 2:20 (21 November 2012)
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Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection
Andrew Stubbs, Elizabeth A McClellan, Sebastiaan Horsman, Saskia D Hiltemann, Ivo Palli, Stephan Nouwens, Anton HJ Koning, Frits Hoogland, Joke Reumers, Daphne Heijsman, Sigrid Swagemakers, Andreas Kremer, Jules Meijerink, Diether Lambrechts, Peter J van der Spek Journal of Clinical Bioinformatics 2012, 2:19 (19 November 2012)
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The H-factor as a novel quality metric for homology modeling
Eric di Luccio, Patrice Koehl Journal of Clinical Bioinformatics 2012, 2:18 (2 November 2012)
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Modeling autism: a systems biology approach
Mary Randolph-Gips, Pramila Srinivasan Journal of Clinical Bioinformatics 2012, 2:17 (8 October 2012)
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Cancer classification: Mutual information, target network and strategies of therapy
Wen-Chin Hsu, Chan-Cheng Liu, Fu Chang, Su-Shing Chen Journal of Clinical Bioinformatics 2012, 2:16 (2 October 2012)
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High-prevalence and broad spectrum of Cell Adhesion and Extracellular Matrix gene pathway mutations in epithelial ovarian cancer
Arash Rafii, Najeeb M Halabi, Joel A Malek Journal of Clinical Bioinformatics 2012, 2:15 (24 September 2012)
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A model-based statistic for detecting molecular markers associated with complex survival patterns in early-stage cancer
Philippe Broët, Thierry Moreau Journal of Clinical Bioinformatics 2012, 2:14 (6 August 2012)
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Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes
Xiaowei Guan, Mark R Chance, Jill S Barnholtz-Sloan Journal of Clinical Bioinformatics 2012, 2:13 (22 May 2012)
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Effects of autoclaving and high pressure on allergenicity of hazelnut proteins
Elena López, Carmen Cuadrado, Carmen Burbano, Maria Jiménez, Julia Rodríguez, Jesús F Crespo Journal of Clinical Bioinformatics 2012, 2:12 (22 May 2012)
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A dynamic model for tumour growth and metastasis formation
Volker Haustein, Udo Schumacher Journal of Clinical Bioinformatics 2012, 2:11 (1 May 2012)
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A comparative analysis of protein targets of withdrawn cardiovascular drugs in human and mouse
Yuqi Zhao, Jingwen Wang, Yanjie Wang, Jingfei Huang Journal of Clinical Bioinformatics 2012, 2:10 (1 May 2012)
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An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature
Prakash M Nadkarni, Chirag R Parikh Journal of Clinical Bioinformatics 2012, 2:9 (16 April 2012)
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Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome
Khader Shameer, Ramanathan Sowdhamini Journal of Clinical Bioinformatics 2012, 2:8 (3 April 2012)
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Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference
Francisco J Azuaje, Michaël Heymann, Anne-Marie Ternes, Anke Wienecke-Baldacchino, Daniel Struck, Danièle Moes, Reinhard Schneider Journal of Clinical Bioinformatics 2012, 2:7 (13 March 2012)
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Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease
Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding, Iftikhar J Kullo Journal of Clinical Bioinformatics 2012, 2:6 (12 March 2012)
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Monte Carlo simulation of the Spearman-Kaerber TCID50
Niels H Wulff, Maria Tzatzaris, Philip J Young Journal of Clinical Bioinformatics 2012, 2:5 (13 February 2012)
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Analysis of the salivary microbiome using culture-independent techniques
Vladimir Lazarevic, Katrine Whiteson, Nadia Gaïa, Yann Gizard, David Hernandez, Laurent Farinelli, Magne Østerås, Patrice François, Jacques Schrenzel Journal of Clinical Bioinformatics 2012, 2:4 (2 February 2012)
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A distinct metabolic signature predicts development of fasting plasma glucose
Manuela Hische, Abdelhalim Larhlimi, Franziska Schwarz, Antje Fischer-Rosinský, Thomas Bobbert, Anke Assmann, Gareth S Catchpole, Andreas FH Pfeiffer, Lothar Willmitzer, Joachim Selbig, Joachim Spranger Journal of Clinical Bioinformatics 2012, 2:3 (2 February 2012)
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Brain cancer prognosis: independent validation of a clinical bioinformatics approach
Raffaele Fronza, Michele Tramonti, William R Atchley, Christine Nardini Journal of Clinical Bioinformatics 2012, 2:2 (1 February 2012)
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A network flow approach to predict drug targets from microarray data, disease genes and interactome network - case study on prostate cancer
Shih-Heng Yeh, Hsiang-Yuan Yeh, Von-Wun Soo Journal of Clinical Bioinformatics 2012, 2:1 (13 January 2012)
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Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans
Mark TW Ebbert, Roy RL Bastien, Kenneth M Boucher, Miguel Martín, Eva Carrasco, Rosalía Caballero, Inge J Stijleman, Philip S Bernard, Julio C Facelli Journal of Clinical Bioinformatics 2011, 1:37 (23 December 2011)
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Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach
Emmanouil G Sifakis, George I Lambrou, Andriana Prentza, Spiros Vlahopoulos, Dimitris Koutsouris, Fotini Tzortzatou-Stathopoulou, Aristotelis A Chatziioannou Journal of Clinical Bioinformatics 2011, 1:36 (20 December 2011)
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Significance of bioinformatics in research of chronic obstructive pulmonary disease
Hong Chen, Xiangdong Wang Journal of Clinical Bioinformatics 2011, 1:35 (20 December 2011)
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Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers
Michael Netzer, Klaus M Weinberger, Michael Handler, Michael Seger, Xiaocong Fang, Karl G Kugler, Armin Graber, Christian Baumgartner Journal of Clinical Bioinformatics 2011, 1:34 (19 December 2011)
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Mathematical morphology-based approach to the enhancement of morphological features in medical images
Yoshitaka Kimori Journal of Clinical Bioinformatics 2011, 1:33 (16 December 2011)
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Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping
Teeradache Viangteeravat, Matthew N Anyanwu, Venkateswara Nagisetty, Emin Kuscu, Mark Sakauye, Duojiao Wu Journal of Clinical Bioinformatics 2011, 1:32 (21 November 2011)
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Proteome analysis of bronchoalveolar lavage in pulmonary langerhans cell histiocytosis
Claudia Landi, Elena Bargagli, Barbara Magi, Antje Prasse, Joachim Muller-Quernheim, Luca Bini, Paola Rottoli Journal of Clinical Bioinformatics 2011, 1:31 (10 November 2011)
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Metabonomics-based omics study and atherosclerosis
Duo-jiao Wu, Bi-jun Zhu, Xiang-dong Wang Journal of Clinical Bioinformatics 2011, 1:30 (31 October 2011)
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Diagnostic markers based on a computational model of lipoprotein metabolism
Daniël B van Schalkwijk, Ben van Ommen, Andreas P Freidig, Jan van der Greef, Albert A de Graaf Journal of Clinical Bioinformatics 2011, 1:29 (26 October 2011)
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Role of clinical bioinformatics in the development of network-based Biomarkers
Xiangdong Wang Journal of Clinical Bioinformatics 2011, 1:28 (24 October 2011)
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Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection
Konstantina Dimitrakopoulou, Charalampos Tsimpouris, George Papadopoulos, Claudia Pommerenke, Esther Wilk, Kyriakos N Sgarbas, Klaus Schughart, Anastasios Bezerianos Journal of Clinical Bioinformatics 2011, 1:27 (21 October 2011)
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Technical phosphoproteomic and bioinformatic tools useful in cancer research
Elena López, Jan-Jaap Wesselink, Isabel López, Jesús Mendieta, Paulino Gómez-Puertas, Sarbelio Muñoz Journal of Clinical Bioinformatics 2011, 1:26 (3 October 2011)
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Automated ERCC1 immunochemistry on hybrid cytology/tissue microarray of malignant effusions: evaluation of antibodies 8F1 and D-10
Alex Soltermann, Sandra Kilgus-Hawelski, Silvia Behnke, Martina Storz, Holger Moch, Beata Bode Journal of Clinical Bioinformatics 2011, 1:25 (30 September 2011)
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Biobank resources for future patient care: developments, principles and concepts
Ákos Végvári, Charlotte Welinder, Henrik Lindberg, Thomas E Fehniger, György Marko-Varga Journal of Clinical Bioinformatics 2011, 1:24 (16 September 2011)
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Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study
Masaharu Nomura, Tetsuya Fukuda, Kiyonaga Fujii, Takeshi Kawamura, Hiromasa Tojo, Makoto Kihara, Yasuhiko Bando, Adi F Gazdar, Masahiro Tsuboi, Hisashi Oshiro, Toshitaka Nagao, Tatsuo Ohira, Norihiko Ikeda, Noriko Gotoh, Harubumi Kato, Gyorgy Marko-Varga, Toshihide Nishimura Journal of Clinical Bioinformatics 2011, 1:23 (3 September 2011)
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Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach
Prakash M Nadkarni, Rowena Kemp, Chirag R Parikh Journal of Clinical Bioinformatics 2011, 1:22 (25 August 2011)
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Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma
Gurkan Bebek, Mohammed Orloff, Charis Eng Journal of Clinical Bioinformatics 2011, 1:21 (2 August 2011)
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